The Gut-Brain Connection: Why Gut Health Is Crucial During Perimenopause

Woman holding glower stomach

If you've noticed mood swings, brain fog, disrupted sleep, or heightened anxiety during perimenopause, your gut health might be partly to blame. Many of us think gut health is solely about digestion, but it plays a vital role in our overall well-being—especially during perimenopause.

Your gut, often called your "second brain," is intricately connected to hormonal health. It produces many neurotransmitters—like serotonin and dopamine—influencing mood, energy, and sleep. As hormones fluctuate in perimenopause, the balance of your gut microbiome and the production of these critical chemicals can be disrupted, amplifying physical and emotional symptoms.

How Gut Health Affects Women in Perimenopause

During perimenopause, estrogen and progesterone levels rise and fall unpredictably, affecting nearly every system in the body, including the gut. Hormonal fluctuations can lead to:

  • Increased gut permeability (leaky gut) occurs when the intestines' lining becomes less effective at keeping toxins out of the bloodstream, leading to inflammation.

  • Changes in the microbiome: Hormones can influence the balance of bacteria in the gut, leading to symptoms like bloating, constipation, or diarrhea.

  • Stress sensitivity: The gut-brain axis closely links the gut and brain. Perimenopause often brings heightened stress responses, which can trigger gut inflammation and disrupt digestion.

These changes can result in mood swings, fatigue, brain fog, and even increased sensitivity to stress—all symptoms that many women attribute solely to hormones but are also deeply connected to gut health.

Woman showing many moods

The Gut as Your Second Brain

Your gut is home to the enteric nervous system (ENS), a network of over 100 million nerve cells that function independently but communicate closely with your brain. The ENS produces more than 30 neurotransmitters, including:

  • Serotonin: About 95% of this "feel-good" chemical is made in the gut, regulating mood, sleep, and appetite.

  • Dopamine: Known for its role in motivation and pleasure.

  • GABA: Helps calm anxiety and stress.

  • Melatonin: Regulates sleep-wake cycles.

When the gut is inflamed or out of balance, the production of these neurotransmitters can decrease, leading to depression, anxiety, poor sleep, and brain fog—some of the most common symptoms that women in perimenopause experience.

Woman in sweater with head in hands

The Stress-Gut Connection

Stress is another major player in gut health, and during perimenopause, stress levels can soar due to hormonal shifts. When you're under stress, your body produces cortisol, a stress hormone that can inflame the gut lining and disrupt digestion. Over time, chronic stress can lead to:

  • Leaky gut

  • IBS (Irritable Bowel Syndrome)

  • Bloating, constipation, or diarrhea

The brain-gut connection is so strong that antidepressants are sometimes prescribed to alleviate IBS symptoms. However, these medications often address symptoms rather than the root cause—gut inflammation and microbial imbalances.


5 Simple Ways to Support Gut Health During Perimenopause

  • Avoid Alcohol: Alcohol is essentially liquid sugar, which feeds harmful gut bacteria and increases inflammation. While tempting, cutting back on alcohol can significantly improve gut health, reduce mood swings, and help with better sleep.

  • Eliminate Gluten and/or Dairy: For many women, gluten and dairy can be inflammatory, especially during perimenopause. Experiment with eliminating one or both to see if it helps reduce bloating and improve overall well-being.

  • Cut Back on Sugar: Sugar significantly disrupts gut health, feeding harmful bacteria and promoting inflammation. Reducing sugar intake can support a balanced microbiome and decrease cravings.

  • Manage Stress: Chronic stress wreaks havoc on the gut. Incorporate stress-relieving practices into your routine, like mindfulness, yoga, or simply taking time for self-care.

  • Prioritize Sleep: Sleep is essential for gut repair and overall health. Aim for 7–9 hours of quality sleep each night and establish a consistent bedtime routine.

Supplements and pills in woman's hand

Supplements to Soothe and Support Gut Health

Certain supplements can help heal and balance the gut, especially during the challenging perimenopausal years:

  • Aloe Vera: Soothes inflammation and supports detoxification.

  • Ashwagandha: Balances cortisol and eases stress-related gut issues.

  • Pine Bark Extract: High in antioxidants, reducing inflammation and joint pain.

  • Chamomile: Calms digestive discomfort and promotes restful sleep.

  • Probiotics: A good-quality probiotic can replenish healthy bacteria in your gut. Look for a blend with at least 50 billion CFU and rotate brands every few months.

*Make sure you check in with your healthcare provider before starting any new supplements.

Taking Control of Gut Health During Perimenopause

Supporting your gut during perimenopause isn't just about improving digestion—it's about enhancing your mood, sleep, and energy while reducing inflammation and stress. By nurturing your second brain, you're setting the foundation for better hormonal balance and overall well-being.

With the right diet, lifestyle adjustments, and a focus on self-care, you can navigate perimenopause with greater ease and vitality. Your gut—and your second brain—will thank you.

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The Lesser-Known Symptoms of Perimenopause